Table 1

Putative Daphnia pulex genes associated with eicosanoid biosynthesis

Putative genea
Protein IDb
Protein size
(AA)
Best match
(species)c
Accession
number
Similarity
(%)
E-value

Phospholipase A2
DAPPUDRAFT_5959
129
Apis mellifera
XP_624621
76
0.0
Cyclooxygenase
DAPPUDRAFT_313427
689
Sus scrofa
NP_999486
62
0.0
Prostaglandin D2 synthase A
DAPPUDRAFT_307787
211
Tribolium castaneum
XP_970647
49
2.5E-35
Prostaglandin D2 synthase B
DAPPUDRAFT_316534
228
T. castaneum
XP_967406
54
2.3E-32
Prostaglandin E2 synthase
DAPPUDRAFT_56335
283
Aedes aegypti
EAT39424
61
0.0
Carbonyl reductase 1 (PG 9-ketoreductase)
DAPPUDRAFT_310758
257
Xenopus laevis
Q6DJN9
76
0.0
Thromboxane A
DAPPUDRAFT_96715
463
Homarus americanus
AAC28351
49
0.0
Thromboxane B
DAPPUDRAFT_328913
501
H. americanus
AAC28351
59
0.0
Lipoxygenase 1
DAPPUDRAFT_311736
562
T. castaneum
XP_969219
48
0.0
Lipoxygenase 2
DAPPUDRAFT_95367
433
Bos taurus
XP_593842
33
2.1E-43
Glutathione peroxidase
DAPPUDRAFT_337058
219
Ixodes scapularis
AAY66814
67
0.0
Leukotriene A4 hydrolase
DAPPUDRAFT_313156
619
X. tropicalis
NP_001006898
67
0.0
Leukotriene B4 12-hydroxydehydrogenase
DAPPUDRAFT_311788
340
A. aegypti
EAT35376
65
0.0
Prostanoid receptor EP4 isoform A
DAPPUDRAFT_58618
166
Danio rerio
LOC560057
59
3.6E-38
Prostanoid receptor EP4 isoform B
DAPPUDRAFT_58558
121
Tetraodon nigroviridis
CAF96390
60
4.2E-30

aGene names displayed in italics are unlikely to be involved in daphnid eicosanoid biosynthesis (see Fig. 2 and text for further information); bD. pulex protein ID is linked to a GenBank [19] accession no.; cVertebrate species are signified by bold font, while invertebrate matches are denoted by normal font.

Heckmann et al. Frontiers in Zoology 2008 5:11   doi:10.1186/1742-9994-5-11