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Parametric and non-parametric masking of randomness in sequence alignments can be improved and leads to better resolved trees

Patrick Kück*, Karen Meusemann, Johannes Dambach, Birthe Thormann, Björn M von Reumont, Johann W Wägele and Bernhard Misof

Frontiers in Zoology 2010, 7:10 doi:10.1186/1742-9994-7-10

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The complete mitochondrial genome of Flustra foliacea (Ectoprocta, Cheilostomata) - compositional bias affects phylogenetic analyses of lophotrochozoan relationships

Maximilian P Nesnidal, Martin Helmkampf, Iris Bruchhaus, Bernhard Hausdorf BMC Genomics 2011, 12:572 (23 November 2011)

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The taming of an impossible child: a standardized all-in approach to the phylogeny of Hymenoptera using public database sequences

Ralph S Peters, Benjamin Meyer, Lars Krogmann, Janus Borner, Karen Meusemann, Kai Schütte, Oliver Niehuis, Bernhard Misof BMC Biology 2011, 9:55 (18 August 2011)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central |  Editor’s summary

Ralph Peters and colleagues feed the available data on the super-diverse insect order of wasps, bees, sawflies and ants into an improved bioinformatic pipeline designed to generate phylogenetic trees from rapidly accumulating sequence data, and demonstrate its usefulness, and the need for more data to resolve outstanding phylogenetic issues.

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